Genome Meta Information: Rothia mucilaginosa HMSC069C10 (GCA_001812205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001812205.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 HMSC069C10 | ||
| Strain or Isolate | HMSC069C10 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 175 | ||
| Contigs |
|
||
| Total Sequence Length | 2,285,914 (bp) | ||
| GC Percentage | 59.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/205/GCA_001812205.1_ASM181220v1 | ||
| CDS | 1752 | ||
| Genes | 1820 | ||
| mRNA | 1820 | ||
| misc RNA | 14 | ||
| rRNA | 5 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 0.73 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181220v1 |
| GenBank Assembly Accession | GCA_001812205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001812205.1 [NCBI] |
| BioSample | SAMN04477654 [NCBI] |
| BioProject | PRJNA299996 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-06T08:06:06.050 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTEP01 |
| NCBI TaxID | 1739346 |
| Isolation Source | sputum |
| Geo Location | |
