Genome Meta Information: Rothia mucilaginosa HMSC068F09 (GCA_001812775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001812775.1 | ||
| HOMD Taxon-ID | HMT-0147 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-147 Rothia mucilaginosa clade-147 HMSC068F09 | ||
| Strain or Isolate | HMSC068F09 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa_A |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 142 | ||
| Contigs |
|
||
| Total Sequence Length | 2,239,545 (bp) | ||
| GC Percentage | 62.1 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/775/GCA_001812775.1_ASM181277v1 | ||
| CDS | 1727 | ||
| Genes | 1794 | ||
| mRNA | 1794 | ||
| misc RNA | 12 | ||
| rRNA | 5 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.41 % | ||
| CheckM Contamination | 0.88 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181277v1 |
| GenBank Assembly Accession | GCA_001812775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001812775.1 [NCBI] |
| BioSample | SAMN04480042 [NCBI] |
| BioProject | PRJNA300028 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-08T12:05:23.500 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTXV01 |
| NCBI TaxID | 1739378 |
| Isolation Source | sputum |
| Geo Location | |
