Genome Meta Information: Lancefieldella rimae HMSC064B08 (GCA_001813205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001813205.1 | ||
| HOMD Taxon-ID | HMT-0750 | ||
| Species Name (in use by HOMD) | Lancefieldella rimae | ||
| Organism Name (as deposited) | HMT-750 Lancefieldella rimae HMSC064B08 | ||
| Strain or Isolate | HMSC064B08 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella; s__Lancefieldella rimae |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 141 | ||
| Contigs |
|
||
| Total Sequence Length | 1,592,142 (bp) | ||
| GC Percentage | 49.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/205/GCA_001813205.1_ASM181320v1 | ||
| CDS | 1412 | ||
| Genes | 1470 | ||
| mRNA | 1470 | ||
| misc RNA | 9 | ||
| rRNA | 4 | ||
| tRNA | 45 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 1.03 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181320v1 |
| GenBank Assembly Accession | GCA_001813205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001813205.1 [NCBI] |
| BioSample | SAMN04480062 [NCBI] |
| BioProject | PRJNA300052 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-08T12:05:24.527 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTXB01 |
| NCBI TaxID | 1739402 |
| Isolation Source | abscess l neck |
| Geo Location | |
