Genome Meta Information: Neisseria sicca HMSC055H02 (GCA_001813335.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001813335.1 | ||
| HOMD Taxon-ID | HMT-0764 | ||
| Species Name (in use by HOMD) | Neisseria sicca | ||
| Organism Name (as deposited) | HMT-764 Neisseria sicca HMSC055H02 | ||
| Strain or Isolate | HMSC055H02 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria sicca_C |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 122 | ||
| Contigs |
|
||
| Total Sequence Length | 2,419,681 (bp) | ||
| GC Percentage | 51.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/335/GCA_001813335.1_ASM181333v1 | ||
| CDS | 2209 | ||
| Genes | 2303 | ||
| mRNA | 2303 | ||
| misc RNA | 39 | ||
| rRNA | 3 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.81 % | ||
| CheckM Contamination | 0.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181333v1 |
| GenBank Assembly Accession | GCA_001813335.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001813335.1 [NCBI] |
| BioSample | SAMN04480068 [NCBI] |
| BioProject | PRJNA300061 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-08T12:05:24.720 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTWU01 |
| NCBI TaxID | 1739411 |
| Isolation Source | sputum |
| Geo Location | |
