Genome Meta Information: Neisseria perflava HMSC066B07 (GCA_001814445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001814445.1 | ||
| HOMD Taxon-ID | HMT-0101 | ||
| Species Name (in use by HOMD) | Neisseria perflava | ||
| Organism Name (as deposited) | HMT-101 Neisseria perflava HMSC066B07 | ||
| Strain or Isolate | HMSC066B07 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria sp001838135 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 178 | ||
| Contigs |
|
||
| Total Sequence Length | 2,249,644 (bp) | ||
| GC Percentage | 49.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/445/GCA_001814445.1_ASM181444v1 | ||
| CDS | 2064 | ||
| Genes | 2161 | ||
| mRNA | 2161 | ||
| misc RNA | 36 | ||
| rRNA | 6 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.63 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181444v1 |
| GenBank Assembly Accession | GCA_001814445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001814445.1 [NCBI] |
| BioSample | SAMN04480396 [NCBI] |
| BioProject | PRJNA300126 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-08T13:05:25.360 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTUT01 |
| NCBI TaxID | 1739476 |
| Isolation Source | trachael aspirate |
| Geo Location | |
