Genome Meta Information: Rothia mucilaginosa HMSC076D04 (GCA_001814645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001814645.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 HMSC076D04 | ||
| Strain or Isolate | HMSC076D04 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 106 | ||
| Contigs |
|
||
| Total Sequence Length | 2,321,240 (bp) | ||
| GC Percentage | 59.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/645/GCA_001814645.1_ASM181464v1 | ||
| CDS | 1799 | ||
| Genes | 1864 | ||
| mRNA | 1864 | ||
| misc RNA | 13 | ||
| rRNA | 4 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0.63 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181464v1 |
| GenBank Assembly Accession | GCA_001814645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001814645.1 [NCBI] |
| BioSample | SAMN04480404 [NCBI] |
| BioProject | PRJNA300134 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-08T13:05:25.643 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTUL01 |
| NCBI TaxID | 1739484 |
| Isolation Source | sputum |
| Geo Location | |
