Genome Meta Information: Haemophilus parainfluenzae HMSC068C11 (GCA_001815355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001815355.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae HMSC068C11 | ||
| Strain or Isolate | HMSC068C11 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D sp001815355 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 144 | ||
| Contigs |
|
||
| Total Sequence Length | 1,904,337 (bp) | ||
| GC Percentage | 39.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/355/GCA_001815355.1_ASM181535v1 | ||
| CDS | 1795 | ||
| Genes | 1876 | ||
| mRNA | 1876 | ||
| misc RNA | 24 | ||
| rRNA | 7 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.77 % | ||
| CheckM Contamination | 0.17 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181535v1 |
| GenBank Assembly Accession | GCA_001815355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001815355.1 [NCBI] |
| BioSample | SAMN04480439 [NCBI] |
| BioProject | PRJNA300173 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-08T13:05:26.877 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTTC01 |
| NCBI TaxID | 1739522 |
| Isolation Source | sputum |
| Geo Location | |
