Genome Meta Information: Staphylococcus caprae HMSC036D05 (GCA_001836225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001836225.1 | ||
| HOMD Taxon-ID | HMT-0567 | ||
| Species Name (in use by HOMD) | Staphylococcus caprae | ||
| Organism Name (as deposited) | HMT-567 Staphylococcus caprae HMSC036D05 | ||
| Strain or Isolate | HMSC036D05 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus caprae |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 158 | ||
| Contigs |
|
||
| Total Sequence Length | 2,536,023 (bp) | ||
| GC Percentage | 33.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/225/GCA_001836225.1_ASM183622v1 | ||
| CDS | 2359 | ||
| Genes | 2457 | ||
| mRNA | 2457 | ||
| misc RNA | 66 | ||
| rRNA | 3 | ||
| tRNA | 28 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.51 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM183622v1 |
| GenBank Assembly Accession | GCA_001836225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001836225.1 [NCBI] |
| BioSample | SAMN04498590 [NCBI] |
| BioProject | PRJNA296187 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-18T16:05:19.007 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTRJ01 |
| NCBI TaxID | 1715059 |
| Isolation Source | fluid l knee |
| Geo Location | |
