Genome Meta Information: Neisseria perflava HMSC056A04 (GCA_001836315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001836315.1 | ||
| HOMD Taxon-ID | HMT-0101 | ||
| Species Name (in use by HOMD) | Neisseria perflava | ||
| Organism Name (as deposited) | HMT-101 Neisseria perflava HMSC056A04 | ||
| Strain or Isolate | HMSC056A04 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria sp001838135 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 139 | ||
| Contigs |
|
||
| Total Sequence Length | 2,239,820 (bp) | ||
| GC Percentage | 48.97 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/315/GCA_001836315.1_ASM183631v1 | ||
| CDS | 2077 | ||
| Genes | 2166 | ||
| mRNA | 2166 | ||
| misc RNA | 38 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.57 % | ||
| CheckM Contamination | 0.5 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM183631v1 |
| GenBank Assembly Accession | GCA_001836315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001836315.1 [NCBI] |
| BioSample | SAMN04498579 [NCBI] |
| BioProject | PRJNA296174 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-18T16:05:18.200 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTRE01 |
| NCBI TaxID | 1715047 |
| Isolation Source | trach aspirate |
| Geo Location | |
