Genome Meta Information: Rothia mucilaginosa HMSC061D12 (GCA_001836735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001836735.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 HMSC061D12 | ||
| Strain or Isolate | HMSC061D12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia sp001836735 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 171 | ||
| Contigs |
|
||
| Total Sequence Length | 2,336,535 (bp) | ||
| GC Percentage | 59.69 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/735/GCA_001836735.1_ASM183673v1 | ||
| CDS | 1798 | ||
| Genes | 1866 | ||
| mRNA | 1866 | ||
| misc RNA | 13 | ||
| rRNA | 6 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM183673v1 |
| GenBank Assembly Accession | GCA_001836735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001836735.1 [NCBI] |
| BioSample | SAMN04498645 [NCBI] |
| BioProject | PRJNA296289 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-18T16:05:21.937 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTQJ01 |
| NCBI TaxID | 1715161 |
| Isolation Source | sputum |
| Geo Location | |
