Genome Meta Information: Neisseria subflava HMSC078C12 (GCA_001838065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001838065.1 | ||
| HOMD Taxon-ID | HMT-0476 | ||
| Species Name (in use by HOMD) | Neisseria subflava | ||
| Organism Name (as deposited) | HMT-476 Neisseria subflava HMSC078C12 | ||
| Strain or Isolate | HMSC078C12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria sp000186165 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 126 | ||
| Contigs |
|
||
| Total Sequence Length | 2,242,214 (bp) | ||
| GC Percentage | 49.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/065/GCA_001838065.1_ASM183806v1 | ||
| CDS | 2105 | ||
| Genes | 2196 | ||
| mRNA | 2196 | ||
| misc RNA | 37 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.23 % | ||
| CheckM Contamination | 0.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM183806v1 |
| GenBank Assembly Accession | GCA_001838065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001838065.1 [NCBI] |
| BioSample | SAMN04498659 [NCBI] |
| BioProject | PRJNA296203 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-18T16:05:22.653 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTOB01 |
| NCBI TaxID | 1715075 |
| Isolation Source | sputum |
| Geo Location | |
