Genome Meta Information: Microbacterium ginsengisoli 71-23 (GCA_001897265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001897265.1 | ||
| HOMD Taxon-ID | HMT-0185 | ||
| Species Name (in use by HOMD) | Microbacterium ginsengisoli | ||
| Organism Name (as deposited) | HMT-185 Microbacterium ginsengisoli 71-23 | ||
| Strain or Isolate | 71-23 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium; s__Microbacterium ginsengisoli |
||
| Sequencing Technology | Illumina HiSeq2500 | ||
| Genome Coverage | 10 | ||
| Contigs |
|
||
| Total Sequence Length | 3,008,215 (bp) | ||
| GC Percentage | 70.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/897/265/GCA_001897265.1_ASM189726v1 | ||
| CDS | 2864 | ||
| Genes | 2931 | ||
| mRNA | 2931 | ||
| misc RNA | 9 | ||
| rRNA | 1 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.19 % | ||
| CheckM Contamination | 4.26 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM189726v1 |
| GenBank Assembly Accession | GCA_001897265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001897265.1 [NCBI] |
| BioSample | SAMN05660528 [NCBI] |
| BioProject | PRJNA279279 [NCBI] |
| Submitter | Banfield Lab, University of California, Berkeley |
| Submission Date | 2016-08-25T14:32:20.546 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MKSL01 |
| NCBI TaxID | 1895787 |
| Isolation Source | Ammonium sulfate bioreactor |
| Geo Location | South Africa: University of Ca |
