Genome Meta Information: Actinomyces oris F4D1 (GCA_001929365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001929365.1 | ||
| HOMD Taxon-ID | HMT-0169 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-169 Actinomyces oris clade-169 F4D1 | ||
| Strain or Isolate | F4D1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces sp915069725 |
||
| Sequencing Technology | Illumina GAIIx; 454 | ||
| Genome Coverage | 12 | ||
| Contigs |
|
||
| Total Sequence Length | 3,025,390 (bp) | ||
| GC Percentage | 68.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/929/365/GCA_001929365.1_ASM192936v1 | ||
| CDS | 2495 | ||
| Genes | 2566 | ||
| mRNA | 2566 | ||
| misc RNA | 12 | ||
| rRNA | 3 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.19 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM192936v1 |
| GenBank Assembly Accession | GCA_001929365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001929365.1 [NCBI] |
| BioSample | SAMN05898719 [NCBI] |
| BioProject | PRJNA347929 [NCBI] |
| Submitter | Kings College London |
| Submission Date | 2016-10-12T09:54:06.507 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MSQE01 |
| NCBI TaxID | 544580 |
| Isolation Source | Plaque (caries -) |
| Geo Location | United Kingdom: London |
