Genome Meta Information: Lactobacillus jensenii SNUV360 (GCA_001936235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001936235.1 | ||
| HOMD Taxon-ID | HMT-0839 | ||
| Species Name (in use by HOMD) | Lactobacillus jensenii | ||
| Organism Name (as deposited) | HMT-839 Lactobacillus jensenii SNUV360 | ||
| Strain or Isolate | SNUV360 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus jensenii |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 420 | ||
| Contigs |
|
||
| Total Sequence Length | 1,672,949 (bp) | ||
| GC Percentage | 34.44 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/936/235/GCA_001936235.1_ASM193623v1 | ||
| CDS | 1595 | ||
| Genes | 1684 | ||
| mRNA | 1684 | ||
| misc RNA | 18 | ||
| rRNA | 12 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.9 % | ||
| CheckM Completeness | 97.13 % | ||
| CheckM Contamination | 1.44 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM193623v1 |
| GenBank Assembly Accession | GCA_001936235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001936235.1 [NCBI] |
| BioSample | SAMN06163224 [NCBI] |
| BioProject | PRJNA357991 [NCBI] |
| Submitter | KoBioLabs, Inc. |
| Submission Date | 2016-12-19T07:09:03.220 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 109790 |
| Isolation Source | vaginal environment |
| Geo Location | South Korea: Seoul |
