Genome Meta Information: Actinomyces oris M48-1B-1 (GCA_001937415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001937415.1 | ||
| HOMD Taxon-ID | HMT-0144 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-144 Actinomyces oris clade-144 M48-1B-1 | ||
| Strain or Isolate | M48-1B-1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces acetigenes |
||
| Sequencing Technology | Illumina GAIIx; 454 | ||
| Genome Coverage | 12 | ||
| Contigs |
|
||
| Total Sequence Length | 3,243,259 (bp) | ||
| GC Percentage | 68.03 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/415/GCA_001937415.1_ASM193741v1 | ||
| CDS | 2676 | ||
| Genes | 2749 | ||
| mRNA | 2749 | ||
| misc RNA | 14 | ||
| rRNA | 5 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.85 % | ||
| CheckM Completeness | 99.49 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM193741v1 |
| GenBank Assembly Accession | GCA_001937415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001937415.1 [NCBI] |
| BioSample | SAMN05898727 [NCBI] |
| BioProject | PRJNA347929 [NCBI] |
| Submitter | Kings College London |
| Submission Date | 2016-10-12T09:54:06.980 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MSKN01 |
| NCBI TaxID | 544580 |
| Isolation Source | Plaque (caries +) |
| Geo Location | United Kingdom: London |
