Genome Meta Information: Actinomyces naeslundii R13240 (GCA_001937605.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001937605.1 | ||
| HOMD Taxon-ID | HMT-0176 | ||
| Species Name (in use by HOMD) | Actinomyces naeslundii | ||
| Organism Name (as deposited) | HMT-176 Actinomyces naeslundii R13240 | ||
| Strain or Isolate | R13240 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces naeslundii |
||
| Sequencing Technology | Illumina GAIIx; 454 | ||
| Genome Coverage | 12 | ||
| Contigs |
|
||
| Total Sequence Length | 3,226,920 (bp) | ||
| GC Percentage | 67.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/605/GCA_001937605.1_ASM193760v1 | ||
| CDS | 2719 | ||
| Genes | 2794 | ||
| mRNA | 2794 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.9 % | ||
| CheckM Completeness | 95.19 % | ||
| CheckM Contamination | 2.9 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM193760v1 |
| GenBank Assembly Accession | GCA_001937605.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001937605.1 [NCBI] |
| BioSample | SAMN05898713 [NCBI] |
| BioProject | PRJNA347929 [NCBI] |
| Submitter | Kings College London |
| Submission Date | 2016-10-12T09:54:06.057 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MSLA01 |
| NCBI TaxID | 1655 |
| Isolation Source | Subphrenic abscess |
| Geo Location | United Kingdom: Cardiff |
