Taxon Table | Genome Table
Genome Meta Information:
Actinomyces
oris
S24V (GCA_001937655.1)
| HOMD Genome-ID |
GCA_001937655.1
|
| HOMD Taxon-ID |
HMT-0079
|
| Species Name (in use by HOMD) |
Actinomyces oris
|
| Organism Name (as deposited) |
HMT-079 Actinomyces oris clade-079 S24V
|
| Strain or Isolate |
S24V
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;
s__Actinomyces oris_B |
| Sequencing Technology |
Illumina GAIIx; 454
|
| Genome Coverage |
12
|
| Contigs |
Number of Contigs: 290
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,045,360 (bp) |
| GC Percentage |
68.37
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/655/GCA_001937655.1_ASM193765v1
|
| CDS |
2651
|
| Genes |
2724
|
| mRNA |
2724
|
| misc RNA |
16
|
| rRNA |
5
|
| tRNA |
51
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
92.72 %
|
| CheckM Completeness |
82.06 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM193765v1
|
| GenBank Assembly Accession |
GCA_001937655.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_001937655.1
[NCBI]
|
| BioSample |
SAMN05898731
[NCBI]
|
| BioProject |
PRJNA347929
[NCBI]
|
| Submitter |
Kings College London
|
| Submission Date |
2016-10-12T09:54:07.207
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
MSKI01
|
| NCBI TaxID |
544580
|
| Isolation Source |
Plaque (caries -)
|
| Geo Location |
United Kingdom: London
|
