Genome Meta Information: Prevotella intermedia strain 17 (GCA_001953935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001953935.1 | ||
| HOMD Taxon-ID | HMT-0643 | ||
| Species Name (in use by HOMD) | Prevotella intermedia | ||
| Organism Name (as deposited) | HMT-643 Prevotella intermedia strain 17 | ||
| Strain or Isolate | strain 17 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella intermedia |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,736,315 (bp) | ||
| GC Percentage | 43.45 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/953/935/GCA_001953935.1_ASM195393v1 | ||
| CDS | 2357 | ||
| Genes | 2431 | ||
| mRNA | 2431 | ||
| misc RNA | 10 | ||
| rRNA | 12 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.54 % | ||
| CheckM Completeness | 88.34 % | ||
| CheckM Contamination | 3.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM195393v1 |
| GenBank Assembly Accession | GCA_001953935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001953935.1 [NCBI] |
| BioSample | SAMN04529095 [NCBI] |
| BioProject | PRJNA313956 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2016-03-02T14:30:24.203 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28131 |
| Isolation Source | periodontal pocket |
| Geo Location | Japan |
