Genome Meta Information: Prevotella intermedia ATCC 25611 (GCA_001953955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001953955.1 | ||
| HOMD Taxon-ID | HMT-0643 | ||
| Species Name (in use by HOMD) | Prevotella intermedia | ||
| Organism Name (as deposited) | HMT-643 Prevotella intermedia ATCC 25611 | ||
| Strain or Isolate | ATCC 25611 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella intermedia |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,674,170 (bp) | ||
| GC Percentage | 43.44 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/953/955/GCA_001953955.1_ASM195395v1 | ||
| CDS | 2270 | ||
| Genes | 2348 | ||
| mRNA | 2348 | ||
| misc RNA | 11 | ||
| rRNA | 13 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.04 % | ||
| CheckM Contamination | 2.01 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM195395v1 |
| GenBank Assembly Accession | GCA_001953955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001953955.1 [NCBI] |
| BioSample | SAMN04529094 [NCBI] |
| BioProject | PRJNA313956 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2016-03-02T14:30:24.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1122984 |
| Isolation Source | Empyema |
| Geo Location | USA |
