Genome Meta Information: Staphylococcus epidermidis 14.1.R1 (GCA_001956655.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001956655.2 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis 14.1.R1 | ||
| Strain or Isolate | 14.1.R1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 372 | ||
| Contigs |
|
||
| Total Sequence Length | 2,606,667 (bp) | ||
| GC Percentage | 32.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/655/GCA_001956655.2_ASM195665v2 | ||
| CDS | 2523 | ||
| Genes | 2683 | ||
| mRNA | 2683 | ||
| misc RNA | 80 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.11 % | ||
| CheckM Completeness | 98.45 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM195665v2 |
| GenBank Assembly Accession | GCA_001956655.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001956655.1 [NCBI] |
| BioSample | SAMN06167133 [NCBI] |
| BioProject | PRJNA358169 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2016-12-20T10:13:03.167 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | |
| Geo Location | Denmark: Aarhus |
