Genome Meta Information: Bordetella pertussis J300 (GCA_001988495.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001988495.1 | ||
| HOMD Taxon-ID | HMT-0828 | ||
| Species Name (in use by HOMD) | Bordetella pertussis | ||
| Organism Name (as deposited) | HMT-828 Bordetella pertussis J300 | ||
| Strain or Isolate | J300 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella; s__Bordetella pertussis |
||
| Sequencing Technology | PacBio RSII; Illumina HiSeq | ||
| Genome Coverage | 87 | ||
| Contigs |
|
||
| Total Sequence Length | 4,105,330 (bp) | ||
| GC Percentage | 67.71 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/988/495/GCA_001988495.1_ASM198849v1 | ||
| CDS | 3895 | ||
| Genes | 3984 | ||
| mRNA | 3984 | ||
| misc RNA | 15 | ||
| rRNA | 9 | ||
| tRNA | 64 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.87 % | ||
| CheckM Completeness | 97.1 % | ||
| CheckM Contamination | 0.51 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM198849v1 |
| GenBank Assembly Accession | GCA_001988495.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001988495.1 [NCBI] |
| BioSample | SAMN04383600 [NCBI] |
| BioProject | PRJNA279196 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2016-01-04T13:08:05.407 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 520 |
| Isolation Source | missing |
| Geo Location | USA: CO |
