Genome Meta Information: Haemophilus ducreyi CCUG 4438 (GCA_002015155.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002015155.1 | ||
| HOMD Taxon-ID | HMT-0821 | ||
| Species Name (in use by HOMD) | Haemophilus ducreyi | ||
| Organism Name (as deposited) | HMT-821 Haemophilus ducreyi CCUG 4438 | ||
| Strain or Isolate | CCUG 4438 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B; s__Haemophilus_B ducreyi |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 86 | ||
| Contigs |
|
||
| Total Sequence Length | 1,534,707 (bp) | ||
| GC Percentage | 37.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/015/155/GCA_002015155.1_ASM201515v1 | ||
| CDS | 1509 | ||
| Genes | 1570 | ||
| mRNA | 1570 | ||
| misc RNA | 17 | ||
| rRNA | 4 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.49 % | ||
| CheckM Contamination | 0.59 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM201515v1 |
| GenBank Assembly Accession | GCA_002015155.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002015155.1 [NCBI] |
| BioSample | SAMN06308731 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2017-02-06T17:59:03.330 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MUYD01 |
| NCBI TaxID | 730 |
| Isolation Source | chancroid |
| Geo Location | Viet Nam: Hanoi |
