Genome Meta Information: Neisseria lactamica Y92-1009 (GCA_002022745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002022745.1 | ||
| HOMD Taxon-ID | HMT-0649 | ||
| Species Name (in use by HOMD) | Neisseria lactamica | ||
| Organism Name (as deposited) | HMT-649 Neisseria lactamica Y92-1009 | ||
| Strain or Isolate | Y92-1009 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria lactamica |
||
| Sequencing Technology | PacBio; Illumina HiSeq | ||
| Genome Coverage | 300 | ||
| Contigs |
|
||
| Total Sequence Length | 2,146,723 (bp) | ||
| GC Percentage | 52.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/022/745/GCA_002022745.1_ASM202274v1 | ||
| CDS | 1980 | ||
| Genes | 2071 | ||
| mRNA | 2071 | ||
| misc RNA | 18 | ||
| rRNA | 12 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.18 % | ||
| CheckM Completeness | 99.07 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM202274v1 |
| GenBank Assembly Accession | GCA_002022745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002022745.1 [NCBI] |
| BioSample | SAMN05437355 [NCBI] |
| BioProject | PRJNA331097 [NCBI] |
| Submitter | University of Southampton |
| Submission Date | 2016-07-25T08:23:04.880 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 486 |
| Isolation Source | nasopharynx |
| Geo Location | United Kingdom: Sheffield |
