Genome Meta Information: Ligilactobacillus salivarius DSM 20554 (GCA_002079585.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002079585.1 | ||
| HOMD Taxon-ID | HMT-0756 | ||
| Species Name (in use by HOMD) | Ligilactobacillus salivarius | ||
| Organism Name (as deposited) | HMT-756 Ligilactobacillus salivarius DSM 20554 | ||
| Strain or Isolate | DSM 20554 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus; s__Ligilactobacillus salivarius |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,971,822 (bp) | ||
| GC Percentage | 32.62 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/079/585/GCA_002079585.1_ASM207958v1 | ||
| CDS | 1933 | ||
| Genes | 2015 | ||
| mRNA | 2015 | ||
| misc RNA | 33 | ||
| rRNA | 2 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.15 % | ||
| CheckM Completeness | 95.96 % | ||
| CheckM Contamination | 1.5 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM207958v1 |
| GenBank Assembly Accession | GCA_002079585.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002079585.1 [NCBI] |
| BioSample | SAMN06163261 [NCBI] |
| BioProject | PRJNA357984 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2016-12-19T07:45:05.880 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NBEM01 |
| NCBI TaxID | 1624 |
| Isolation Source | |
| Geo Location | missing |
