Genome Meta Information: Staphylococcus epidermidis ATCC 14990 (GCA_002087975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002087975.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis ATCC 14990 | ||
| Strain or Isolate | ATCC 14990 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 296.8 | ||
| Contigs |
|
||
| Total Sequence Length | 2,457,519 (bp) | ||
| GC Percentage | 32.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/087/975/GCA_002087975.1_ASM208797v1 | ||
| CDS | 2240 | ||
| Genes | 2390 | ||
| mRNA | 2390 | ||
| misc RNA | 81 | ||
| rRNA | 9 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.68 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM208797v1 |
| GenBank Assembly Accession | GCA_002087975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002087975.1 [NCBI] |
| BioSample | SAMN06624123 [NCBI] |
| BioProject | PRJNA379934 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-03-21T12:25:09.246 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NARC01 |
| NCBI TaxID | 1282 |
| Isolation Source | |
| Geo Location | not applicable |
