Genome Meta Information: Streptococcus oralis OD_348934_12 (GCA_002096215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002096215.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus OD_348934_12 | ||
| Strain or Isolate | OD_348934_12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_F |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 17.06 | ||
| Contigs |
|
||
| Total Sequence Length | 1,852,323 (bp) | ||
| GC Percentage | 41.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/215/GCA_002096215.1_ASM209621v1 | ||
| CDS | 1825 | ||
| Genes | 1934 | ||
| mRNA | 1934 | ||
| misc RNA | 56 | ||
| rRNA | 5 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.19 % | ||
| CheckM Completeness | 97.2 % | ||
| CheckM Contamination | 0.46 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM209621v1 |
| GenBank Assembly Accession | GCA_002096215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002096215.1 [NCBI] |
| BioSample | SAMN06705632 [NCBI] |
| BioProject | PRJNA304678 [NCBI] |
| Submitter | Slagelse Hospital |
| Submission Date | 2017-04-10T14:37:08.503 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NCUC01 |
| NCBI TaxID | 1077464 |
| Isolation Source | blood |
| Geo Location | Denmark: Region of Southern De |
