Genome Meta Information: Campylobacter concisus Lasto127.99 (GCA_002165825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002165825.1 | ||
| HOMD Taxon-ID | HMT-0433 | ||
| Species Name (in use by HOMD) | Campylobacter concisus | ||
| Organism Name (as deposited) | HMT-433 Campylobacter concisus clade-433 Lasto127.99 | ||
| Strain or Isolate | Lasto127.99 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A concisus_AU |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 196 | ||
| Contigs |
|
||
| Total Sequence Length | 2,027,572 (bp) | ||
| GC Percentage | 39.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/825/GCA_002165825.1_ASM216582v1 | ||
| CDS | 1988 | ||
| Genes | 2040 | ||
| mRNA | 2040 | ||
| misc RNA | 4 | ||
| rRNA | 2 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.65 % | ||
| CheckM Completeness | 98.82 % | ||
| CheckM Contamination | 0.38 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM216582v1 |
| GenBank Assembly Accession | GCA_002165825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002165825.1 [NCBI] |
| BioSample | SAMN03457019 [NCBI] |
| BioProject | PRJNA280467 [NCBI] |
| Submitter | Institute of Environmental Science and Research (ESR) |
| Submission Date | 2015-04-01T19:23:24.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NDYQ01 |
| NCBI TaxID | 199 |
| Isolation Source | stool |
| Geo Location | South Africa |
