Genome Meta Information: Afipia broomeae TMED4 (GCA_002172955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002172955.1 | ||
| HOMD Taxon-ID | HMT-0559 | ||
| Species Name (in use by HOMD) | Afipia broomeae | ||
| Organism Name (as deposited) | HMT-559 Afipia broomeae TMED4 | ||
| Strain or Isolate | TMED4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia; s__Afipia broomeae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 5,163,516 (bp) | ||
| GC Percentage | 61.37 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/172/955/GCA_002172955.1_ASM217295v1 | ||
| CDS | 4953 | ||
| Genes | 5042 | ||
| mRNA | 5042 | ||
| misc RNA | 32 | ||
| rRNA | 2 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 67.19 % | ||
| CheckM Contamination | 27.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM217295v1 |
| GenBank Assembly Accession | GCA_002172955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN06971858 [NCBI] |
| BioProject | PRJNA385857 [NCBI] |
| Submitter | Tara Oceans Consortium |
| Submission Date | 2017-05-12T20:08:10.060 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NHBJ01 |
| NCBI TaxID | 1986602 |
| Isolation Source | seawater |
| Geo Location | Mediterranean Sea |
