Genome Meta Information: Lactobacillus johnsonii UMNLJ22 (GCA_002176835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002176835.1 | ||
| HOMD Taxon-ID | HMT-0819 | ||
| Species Name (in use by HOMD) | Lactobacillus johnsonii | ||
| Organism Name (as deposited) | HMT-819 Lactobacillus johnsonii UMNLJ22 | ||
| Strain or Isolate | UMNLJ22 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus sp946579245 |
||
| Sequencing Technology | Illumina MiSeq; PacBio | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 2,042,390 (bp) | ||
| GC Percentage | 35.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/176/835/GCA_002176835.1_ASM217683v1 | ||
| CDS | 1929 | ||
| Genes | 2066 | ||
| mRNA | 2066 | ||
| misc RNA | 37 | ||
| rRNA | 21 | ||
| tRNA | 78 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.02 % | ||
| CheckM Completeness | 92.94 % | ||
| CheckM Contamination | 3.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM217683v1 |
| GenBank Assembly Accession | GCA_002176835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002176835.1 [NCBI] |
| BioSample | SAMN04573146 [NCBI] |
| BioProject | PRJNA316010 [NCBI] |
| Submitter | University of Minnesota |
| Submission Date | 2016-03-22T16:30:07.747 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33959 |
| Isolation Source | ileum |
| Geo Location | USA |
