Genome Meta Information: Prevotella intermedia KCOM 1107 (GCA_002204405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002204405.1 | ||
| HOMD Taxon-ID | HMT-0643 | ||
| Species Name (in use by HOMD) | Prevotella intermedia | ||
| Organism Name (as deposited) | HMT-643 Prevotella intermedia KCOM 1107 | ||
| Strain or Isolate | KCOM 1107 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella intermedia |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 566 | ||
| Contigs |
|
||
| Total Sequence Length | 2,781,500 (bp) | ||
| GC Percentage | 43.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/204/405/GCA_002204405.1_ASM220440v1 | ||
| CDS | 2397 | ||
| Genes | 2469 | ||
| mRNA | 2469 | ||
| misc RNA | 10 | ||
| rRNA | 13 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.38 % | ||
| CheckM Completeness | 89.27 % | ||
| CheckM Contamination | 11.51 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM220440v1 |
| GenBank Assembly Accession | GCA_002204405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002204405.1 [NCBI] |
| BioSample | SAMN07125721 [NCBI] |
| BioProject | PRJNA386728 [NCBI] |
| Submitter | Chosun University |
| Submission Date | 2017-05-16T01:58:04.856 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NHRV01 |
| NCBI TaxID | 28131 |
| Isolation Source | subgingival dental plaque |
| Geo Location | South Korea: Gwangju |
