Taxon Table | Genome Table
Genome Meta Information:
Porphyromonas
gingivalis
SJD5 (GCA_002206065.1)
| HOMD Genome-ID |
GCA_002206065.1
|
| HOMD Taxon-ID |
HMT-0619
|
| Species Name (in use by HOMD) |
Porphyromonas gingivalis
|
| Organism Name (as deposited) |
HMT-619 Porphyromonas gingivalis SJD5
|
| Strain or Isolate |
SJD5
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;
s__Porphyromonas gingivalis |
| Sequencing Technology |
Illumina GAIIx
|
| Genome Coverage |
298
|
| Contigs |
Number of Contigs: 194
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,275,493 (bp) |
| GC Percentage |
48.52
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/206/065/GCA_002206065.1_SJD5
|
| CDS |
1962
|
| Genes |
2022
|
| mRNA |
2022
|
| misc RNA |
13
|
| rRNA |
3
|
| tRNA |
43
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.5 %
|
| CheckM Completeness |
98.21 %
|
| CheckM Contamination |
0.49 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
Ambiguous
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
SJD5
|
| GenBank Assembly Accession |
GCA_002206065.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_002206065.1
[NCBI]
|
| BioSample |
SAMN07255460
[NCBI]
|
| BioProject |
PRJNA205614
[NCBI]
|
| Submitter |
Shanghai Jiao Tong University School of Medicine
|
| Submission Date |
2017-06-19T14:20:05.606
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
ASYN01
|
| NCBI TaxID |
1297565
|
| Isolation Source |
subgingival dental plaque
|
| Geo Location |
China
|
