Genome Meta Information: Porphyromonas gingivalis SJD4 (GCA_002206085.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002206085.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis SJD4 | ||
| Strain or Isolate | SJD4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina GAIIx | ||
| Genome Coverage | 378 | ||
| Contigs |
|
||
| Total Sequence Length | 2,249,706 (bp) | ||
| GC Percentage | 48.44 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/206/085/GCA_002206085.1_SJD4 | ||
| CDS | 1890 | ||
| Genes | 1962 | ||
| mRNA | 1962 | ||
| misc RNA | 21 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.51 % | ||
| CheckM Completeness | 98.42 % | ||
| CheckM Contamination | 0.64 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | SJD4 |
| GenBank Assembly Accession | GCA_002206085.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002206085.1 [NCBI] |
| BioSample | SAMN07255461 [NCBI] |
| BioProject | PRJNA205613 [NCBI] |
| Submitter | Shanghai Jiao Tong University School of Medicine |
| Submission Date | 2017-06-19T14:20:06.853 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ASYM01 |
| NCBI TaxID | 1297564 |
| Isolation Source | subgingival dental plaque |
| Geo Location | China |
