Genome Meta Information: Porphyromonas gingivalis SJD12 (GCA_002208045.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002208045.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis SJD12 | ||
| Strain or Isolate | SJD12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina GAIIx | ||
| Genome Coverage | 230 | ||
| Contigs |
|
||
| Total Sequence Length | 2,264,936 (bp) | ||
| GC Percentage | 48.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/208/045/GCA_002208045.1_SJD12 | ||
| CDS | 1937 | ||
| Genes | 2013 | ||
| mRNA | 2013 | ||
| misc RNA | 22 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.63 % | ||
| CheckM Completeness | 97.59 % | ||
| CheckM Contamination | 0.72 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | SJD12 |
| GenBank Assembly Accession | GCA_002208045.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002208045.1 [NCBI] |
| BioSample | SAMN07255458 [NCBI] |
| BioProject | PRJNA205617 [NCBI] |
| Submitter | Shanghai Jiao Tong University School of Medicine |
| Submission Date | 2017-06-19T14:20:03.410 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ASYP01 |
| NCBI TaxID | 1297567 |
| Isolation Source | subgingival dental plaque |
| Geo Location | China |
