Genome Meta Information: Kocuria rhizophila FDAARGOS_302 (GCA_002208685.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002208685.2 | ||
| HOMD Taxon-ID | HMT-0197 | ||
| Species Name (in use by HOMD) | Kocuria rhizophila | ||
| Organism Name (as deposited) | HMT-197 Kocuria rhizophila FDAARGOS_302 | ||
| Strain or Isolate | FDAARGOS_302 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria; s__Kocuria rhizophila_A |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 697.28 | ||
| Contigs |
|
||
| Total Sequence Length | 2,697,877 (bp) | ||
| GC Percentage | 71.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/208/685/GCA_002208685.2_ASM220868v2 | ||
| CDS | 2313 | ||
| Genes | 2388 | ||
| mRNA | 2388 | ||
| misc RNA | 15 | ||
| rRNA | 9 | ||
| tRNA | 49 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 89.3 % | ||
| CheckM Completeness | 98.46 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM220868v2 |
| GenBank Assembly Accession | GCA_002208685.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002208685.2 [NCBI] |
| BioSample | SAMN06173315 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2016-12-21T16:19:27.400 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 72000 |
| Isolation Source | rhizosphere of narrowleaf cattail (Typha angustifolia) from a floating mat |
| Geo Location | Hungary: Soroksar tributary of |
