Genome Meta Information: Prevotella melaninogenica FDAARGOS_306 (GCA_002208725.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002208725.2 | ||
| HOMD Taxon-ID | HMT-0469 | ||
| Species Name (in use by HOMD) | Prevotella melaninogenica | ||
| Organism Name (as deposited) | HMT-469 Prevotella melaninogenica FDAARGOS_306 | ||
| Strain or Isolate | FDAARGOS_306 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella melaninogenica |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 549.352 | ||
| Contigs |
|
||
| Total Sequence Length | 3,168,230 (bp) | ||
| GC Percentage | 40.98 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/208/725/GCA_002208725.2_ASM220872v2 | ||
| CDS | 2459 | ||
| Genes | 2534 | ||
| mRNA | 2534 | ||
| misc RNA | 9 | ||
| rRNA | 13 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.52 % | ||
| CheckM Contamination | 0.7 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM220872v2 |
| GenBank Assembly Accession | GCA_002208725.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002208725.2 [NCBI] |
| BioSample | SAMN06173319 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2016-12-21T16:19:31.003 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28132 |
| Isolation Source | sputum from South Carolina Dept. of Health and Environmental Control |
| Geo Location | USA: SC |
