Genome Meta Information: Capnocytophaga periodontitidis ChDC OS43 (GCA_002209445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002209445.1 | ||
| HOMD Taxon-ID | HMT-0326 | ||
| Species Name (in use by HOMD) | Capnocytophaga periodontitidis | ||
| Organism Name (as deposited) | HMT-326 Capnocytophaga endodontalis ChDC OS43 | ||
| Strain or Isolate | ChDC OS43 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga periodontitidis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 323 | ||
| Contigs |
|
||
| Total Sequence Length | 3,412,686 (bp) | ||
| GC Percentage | 38.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/209/445/GCA_002209445.1_ASM220944v1 | ||
| CDS | 3105 | ||
| Genes | 3174 | ||
| mRNA | 3174 | ||
| misc RNA | 12 | ||
| rRNA | 9 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.45 % | ||
| CheckM Contamination | 0.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM220944v1 |
| GenBank Assembly Accession | GCA_002209445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002209445.1 [NCBI] |
| BioSample | SAMN07125685 [NCBI] |
| BioProject | PRJNA386716 [NCBI] |
| Submitter | Chosun University |
| Submission Date | 2017-05-15T23:22:06.283 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2708117 |
| Isolation Source | abscess |
| Geo Location | South Korea: Gwangju |
