Genome Meta Information: Staphylococcus epidermidis AMT (GCA_002215535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002215535.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis AMT | ||
| Strain or Isolate | AMT | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 25 | ||
| Contigs |
|
||
| Total Sequence Length | 2,570,371 (bp) | ||
| GC Percentage | 32.08 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/215/535/GCA_002215535.1_ASM221553v1 | ||
| CDS | 2391 | ||
| Genes | 2550 | ||
| mRNA | 2550 | ||
| misc RNA | 78 | ||
| rRNA | 19 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.19 % | ||
| CheckM Completeness | 99.14 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM221553v1 |
| GenBank Assembly Accession | GCA_002215535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002215535.1 [NCBI] |
| BioSample | SAMN07291625 [NCBI] |
| BioProject | PRJNA392321 [NCBI] |
| Submitter | University of New Hampshire-Manchester |
| Submission Date | 2017-06-28T16:48:03.313 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | skin and mucous membranes |
| Geo Location | USA: Manchester, New Hampshire |
