Genome Meta Information: Prevotella copri Indica (GCA_002224675.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002224675.1 | ||
| HOMD Taxon-ID | HMT-0979 | ||
| Species Name (in use by HOMD) | Prevotella copri | ||
| Organism Name (as deposited) | HMT-979 Prevotella copri Indica | ||
| Strain or Isolate | Indica | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella copri_A |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,920,563 (bp) | ||
| GC Percentage | 45.42 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/224/675/GCA_002224675.1_ASM222467v1 | ||
| CDS | 3258 | ||
| Genes | 3359 | ||
| mRNA | 3359 | ||
| misc RNA | 16 | ||
| rRNA | 13 | ||
| tRNA | 71 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.95 % | ||
| CheckM Completeness | 97.87 % | ||
| CheckM Contamination | 0.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM222467v1 |
| GenBank Assembly Accession | GCA_002224675.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002224675.1 [NCBI] |
| BioSample | SAMN07313576 [NCBI] |
| BioProject | PRJNA393007 [NCBI] |
| Submitter | Translational Health Science and Technology Institute |
| Submission Date | 2017-07-04T09:31:02.390 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NMPZ01 |
| NCBI TaxID | 165179 |
| Isolation Source | stool |
| Geo Location | India |
