Genome Meta Information: Leptotrichia sp. HMT-498 F0590 (GCA_002240055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002240055.1 | ||
| HOMD Taxon-ID | HMT-0498 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-498 | ||
| Organism Name (as deposited) | HMT-498 Leptotrichia sp. HMT-498 F0590 | ||
| Strain or Isolate | F0590 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia sp002240055 |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 98 | ||
| Contigs |
|
||
| Total Sequence Length | 2,152,181 (bp) | ||
| GC Percentage | 29.62 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/240/055/GCA_002240055.1_ASM224005v1 | ||
| CDS | 2076 | ||
| Genes | 2188 | ||
| mRNA | 2188 | ||
| misc RNA | 52 | ||
| rRNA | 15 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 95.23 % | ||
| CheckM Contamination | 1.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM224005v1 |
| GenBank Assembly Accession | GCA_002240055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002240055.1 [NCBI] |
| BioSample | SAMN05413925 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2016-07-18T13:01:07.940 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 712368 |
| Isolation Source | Supragingival dental plaque, molar tooth |
| Geo Location | USA: Boston, MA |
