Genome Meta Information: Mogibacterium pumilum ATCC 700696 (GCA_002243385.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002243385.1 | ||
| HOMD Taxon-ID | HMT-0742 | ||
| Species Name (in use by HOMD) | Mogibacterium pumilum | ||
| Organism Name (as deposited) | HMT-742 Mogibacterium pumilum ATCC 700696 | ||
| Strain or Isolate | ATCC 700696 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium; s__Mogibacterium pumilum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 1,862,768 (bp) | ||
| GC Percentage | 41.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/243/385/GCA_002243385.1_ASM224338v1 | ||
| CDS | 1719 | ||
| Genes | 1816 | ||
| mRNA | 1816 | ||
| misc RNA | 41 | ||
| rRNA | 9 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.44 % | ||
| CheckM Contamination | 1.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM224338v1 |
| GenBank Assembly Accession | GCA_002243385.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002243385.1 [NCBI] |
| BioSample | SAMN03897725 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2015-07-23T20:18:24.000 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 86332 |
| Isolation Source | Subgingival plaque, periodontal pocket |
| Geo Location | Japan: Niigata |
