Genome Meta Information: Aggregatibacter actinomycetemcomitans KCOM 1299 (GCA_002266485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002266485.1 | ||
| HOMD Taxon-ID | HMT-0531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans KCOM 1299 | ||
| Strain or Isolate | KCOM 1299 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 1545 | ||
| Contigs |
|
||
| Total Sequence Length | 2,291,820 (bp) | ||
| GC Percentage | 44.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/266/485/GCA_002266485.1_ASM226648v1 | ||
| CDS | 2168 | ||
| Genes | 2354 | ||
| mRNA | 2354 | ||
| misc RNA | 125 | ||
| rRNA | 10 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.73 % | ||
| CheckM Completeness | 98.56 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM226648v1 |
| GenBank Assembly Accession | GCA_002266485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002266485.1 [NCBI] |
| BioSample | SAMN03263581 [NCBI] |
| BioProject | PRJNA270148 [NCBI] |
| Submitter | Chosun University |
| Submission Date | 2014-12-12T00:47:18.430 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NPOT01 |
| NCBI TaxID | 714 |
| Isolation Source | |
| Geo Location | South Korea: Gwangju |
