Genome Meta Information: Rothia dentocariosa OG2-1 (GCA_002276695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002276695.1 | ||
| HOMD Taxon-ID | HMT-0587 | ||
| Species Name (in use by HOMD) | Rothia dentocariosa | ||
| Organism Name (as deposited) | HMT-587 Rothia dentocariosa OG2-1 | ||
| Strain or Isolate | OG2-1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia dentocariosa |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 180.66 | ||
| Contigs |
|
||
| Total Sequence Length | 2,469,903 (bp) | ||
| GC Percentage | 53.67 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/276/695/GCA_002276695.1_ASM227669v1 | ||
| CDS | 2084 | ||
| Genes | 2157 | ||
| mRNA | 2157 | ||
| misc RNA | 12 | ||
| rRNA | 8 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.78 % | ||
| CheckM Completeness | 95.36 % | ||
| CheckM Contamination | 0.12 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM227669v1 |
| GenBank Assembly Accession | GCA_002276695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002276695.1 [NCBI] |
| BioSample | SAMN06718484 [NCBI] |
| BioProject | PRJNA375758 [NCBI] |
| Submitter | SysMilk |
| Submission Date | 2017-04-13T04:55:05.055 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NCWU01 |
| NCBI TaxID | 2047 |
| Isolation Source | kefir |
| Geo Location | Germany |
