Genome Meta Information: Lactobacillus acidophilus LA1 (GCA_002286215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002286215.1 | ||
| HOMD Taxon-ID | HMT-0529 | ||
| Species Name (in use by HOMD) | Lactobacillus acidophilus | ||
| Organism Name (as deposited) | HMT-529 Lactobacillus acidophilus LA1 | ||
| Strain or Isolate | LA1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus acidophilus |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 363 | ||
| Contigs |
|
||
| Total Sequence Length | 1,991,195 (bp) | ||
| GC Percentage | 34.7 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/286/215/GCA_002286215.1_ASM228621v1 | ||
| CDS | 1860 | ||
| Genes | 1977 | ||
| mRNA | 1977 | ||
| misc RNA | 43 | ||
| rRNA | 12 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.91 % | ||
| CheckM Completeness | 96.6 % | ||
| CheckM Contamination | 0.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM228621v1 |
| GenBank Assembly Accession | GCA_002286215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002286215.1 [NCBI] |
| BioSample | SAMN05631052 [NCBI] |
| BioProject | PRJNA340059 [NCBI] |
| Submitter | Korea Food Research Institute |
| Submission Date | 2016-08-25T04:10:02.886 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1579 |
| Isolation Source | feces |
| Geo Location | South Korea: Seoul |
