Genome Meta Information: Capnocytophaga sputigena D1179 (GCA_002302495.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002302495.1 | ||
| HOMD Taxon-ID | HMT-0775 | ||
| Species Name (in use by HOMD) | Capnocytophaga sputigena | ||
| Organism Name (as deposited) | HMT-775 Capnocytophaga sputigena D1179 | ||
| Strain or Isolate | D1179 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga sputigena |
||
| Sequencing Technology | PacBio; Illumina MiSeq | ||
| Genome Coverage | 737.4 | ||
| Contigs |
|
||
| Total Sequence Length | 2,855,148 (bp) | ||
| GC Percentage | 38.78 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/302/495/GCA_002302495.1_ASM230249v1 | ||
| CDS | 2525 | ||
| Genes | 2592 | ||
| mRNA | 2592 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.43 % | ||
| CheckM Completeness | 99.55 % | ||
| CheckM Contamination | 0.19 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM230249v1 |
| GenBank Assembly Accession | GCA_002302495.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002302495.1 [NCBI] |
| BioSample | SAMN06754875 [NCBI] |
| BioProject | PRJNA369395 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2017-04-13T16:54:03.623 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1019 |
| Isolation Source | blood |
| Geo Location | Israel |
