Genome Meta Information: Rothia aeria JCM 11412 (GCA_002355935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002355935.1 | ||
| HOMD Taxon-ID | HMT-0188 | ||
| Species Name (in use by HOMD) | Rothia aeria | ||
| Organism Name (as deposited) | HMT-188 Rothia aeria JCM 11412 | ||
| Strain or Isolate | JCM 11412 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia aeria |
||
| Sequencing Technology | PacBio RS II | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,588,680 (bp) | ||
| GC Percentage | 56.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/355/935/GCA_002355935.1_ASM235593v1 | ||
| CDS | 2792 | ||
| Genes | 2863 | ||
| mRNA | 2863 | ||
| misc RNA | 13 | ||
| rRNA | 8 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.93 % | ||
| CheckM Completeness | 73.31 % | ||
| CheckM Contamination | 0.64 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM235593v1 |
| GenBank Assembly Accession | GCA_002355935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002355935.1 [NCBI] |
| BioSample | SAMD00064392 [NCBI] |
| BioProject | PRJDB5208 [NCBI] |
| Submitter | Osaka Dental University |
| Submission Date | 2016-10-27T01:00:18.940 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 172042 |
| Isolation Source | Mir space station |
| Geo Location | missing |
