Genome Meta Information: Streptococcus oralis osk_001 (GCA_002356415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002356415.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus osk_001 | ||
| Strain or Isolate | osk_001 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_F |
||
| Sequencing Technology | PacBio RS; Illumina MiSeq | ||
| Genome Coverage | 675.9 | ||
| Contigs |
|
||
| Total Sequence Length | 1,889,005 (bp) | ||
| GC Percentage | 41.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/356/415/GCA_002356415.1_ASM235641v1 | ||
| CDS | 1817 | ||
| Genes | 1937 | ||
| mRNA | 1937 | ||
| misc RNA | 47 | ||
| rRNA | 12 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.31 % | ||
| CheckM Completeness | 98.21 % | ||
| CheckM Contamination | 0.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM235641v1 |
| GenBank Assembly Accession | GCA_002356415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002356415.1 [NCBI] |
| BioSample | SAMD00078884 [NCBI] |
| BioProject | PRJDB5718 [NCBI] |
| Submitter | Osaka University |
| Submission Date | 2017-07-15T01:00:37.503 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1077464 |
| Isolation Source | |
| Geo Location | Japan:Osaka, Osaka, Higashisum |
