Genome Meta Information: Rothia mucilaginosa FDAARGOS_369 (GCA_002386365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002386365.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 FDAARGOS_369 | ||
| Strain or Isolate | FDAARGOS_369 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia sp001808955 |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 668.092 | ||
| Contigs |
|
||
| Total Sequence Length | 2,408,770 (bp) | ||
| GC Percentage | 59.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/386/365/GCA_002386365.1_ASM238636v1 | ||
| CDS | 1876 | ||
| Genes | 1950 | ||
| mRNA | 1950 | ||
| misc RNA | 13 | ||
| rRNA | 10 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.27 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 1.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM238636v1 |
| GenBank Assembly Accession | GCA_002386365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002386365.1 [NCBI] |
| BioSample | SAMN07312413 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2017-07-03T15:03:04.486 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 43675 |
| Isolation Source | blood |
| Geo Location | USA:DC |
