Taxon Table | Genome Table
Genome Meta Information:
Prevotella
intermedia
WW855 (GCA_002529305.1)
| HOMD Genome-ID |
GCA_002529305.1
|
| HOMD Taxon-ID |
HMT-0643
|
| Species Name (in use by HOMD) |
Prevotella intermedia
|
| Organism Name (as deposited) |
HMT-643 Prevotella intermedia WW855
|
| Strain or Isolate |
WW855
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella intermedia |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
15
|
| Contigs |
Number of Contigs: 137
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,688,123 (bp) |
| GC Percentage |
43.46
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/305/GCA_002529305.1_ASM252930v1
|
| CDS |
2240
|
| Genes |
2303
|
| mRNA |
2303
|
| misc RNA |
13
|
| rRNA |
4
|
| tRNA |
45
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.44 %
|
| CheckM Completeness |
89.56 %
|
| CheckM Contamination |
6.12 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
Ambiguous
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM252930v1
|
| GenBank Assembly Accession |
GCA_002529305.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_002529305.1
[NCBI]
|
| BioSample |
SAMN07602648
[NCBI]
|
| BioProject |
PRJNA401301
[NCBI]
|
| Submitter |
University of Leicester
|
| Submission Date |
2017-09-04T08:59:04.850
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
NSLZ01
|
| NCBI TaxID |
28131
|
| Isolation Source |
Subgingival plaque
|
| Geo Location |
United Kingdom: London
|
