Genome Meta Information: Rothia dentocariosa OG2-2 (GCA_002554715.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002554715.1 | ||
| HOMD Taxon-ID | HMT-0587 | ||
| Species Name (in use by HOMD) | Rothia dentocariosa | ||
| Organism Name (as deposited) | HMT-587 Rothia dentocariosa OG2-2 | ||
| Strain or Isolate | OG2-2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia dentocariosa |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 360 | ||
| Contigs |
|
||
| Total Sequence Length | 2,446,762 (bp) | ||
| GC Percentage | 53.86 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/554/715/GCA_002554715.1_ASM255471v1 | ||
| CDS | 2077 | ||
| Genes | 2143 | ||
| mRNA | 2143 | ||
| misc RNA | 12 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.77 % | ||
| CheckM Completeness | 96.7 % | ||
| CheckM Contamination | 1.93 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM255471v1 |
| GenBank Assembly Accession | GCA_002554715.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002554715.1 [NCBI] |
| BioSample | SAMN07759903 [NCBI] |
| BioProject | PRJNA375758 [NCBI] |
| Submitter | SysMilk |
| Submission Date | 2017-10-09T05:54:09.466 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PDEV01 |
| NCBI TaxID | 2047 |
| Isolation Source | kefir |
| Geo Location | Germany |
