Genome Meta Information: Staphylococcus capitis FDAARGOS_378 (GCA_002591175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002591175.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis FDAARGOS_378 | ||
| Strain or Isolate | FDAARGOS_378 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 18.67 | ||
| Contigs |
|
||
| Total Sequence Length | 2,485,152 (bp) | ||
| GC Percentage | 32.99 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/175/GCA_002591175.1_ASM259117v1 | ||
| CDS | 2344 | ||
| Genes | 2478 | ||
| mRNA | 2478 | ||
| misc RNA | 52 | ||
| rRNA | 19 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.75 % | ||
| CheckM Completeness | 99.51 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM259117v1 |
| GenBank Assembly Accession | GCA_002591175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002591175.1 [NCBI] |
| BioSample | SAMN07312422 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2017-07-03T15:03:04.630 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29388 |
| Isolation Source | CSF |
| Geo Location | USA:DC |
